FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3377967
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC331915698.25898239976885No Hit
CAGCTTAA82410.2439633069239575No Hit
CAGCATAC72460.2145077201760704No Hit
CAGCTAAC62830.18599944878087915No Hit
CCGCTTAC52070.15414597004648062No Hit
AAGCTTAC45610.13502204136393278No Hit
CAGATTAC44110.13058150064817092No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)