FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11169449
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTGAA1094388897.98055391989345No Hit
CCGTTGAT484920.4341485421527956No Hit
CCGTTAAA370540.33174420689865725No Hit
CCGGTGAA219750.19674202371128602No Hit
CCGATGAA181480.1624789190585856No Hit
CCGTAGAA133020.11909271442127539No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)