FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3453421
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT334404696.83285067184106No Hit
TCATCCTA303220.878027903345697No Hit
TCCTCCTT211940.6137102890148638No Hit
TCATACTT76940.22279357193924518No Hit
TCATCCAT66250.1918387593056277No Hit
TCAACCTT63410.18361502985011094No Hit
TAATCCTT62820.18190657901252122No Hit
ACATCCTT58730.17006325032482283No Hit
TCATCATT58190.16849958345652036No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)