FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3533981
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA142100.40209610634578963No Hit
CATTCAACTAGGCATG123290.34887001373238846No Hit
GTCGACCGATGCTCAA122840.34759666223446023No Hit
ACTGGGCACTTCTCGC104440.2955307343191715No Hit
GGGGGGGGGGGGGGGG97120.27481754995287183No Hit
TGTAAGCTGTTGTGAC96940.27430820935370054No Hit
GCTTTAGGAACTAGTC79490.22493046793403815No Hit
NNNNNNNNNNNNNNNN72960.2064527228641014No Hit
TAGTTGCGACATAGCT58570.16573377163035116No Hit
CATCAGTGATTCGCAA53590.15164201505327846No Hit
CAGGAGCCTCGTGCAC48750.13794641227556118No Hit
CAGGAGCCTTCCAATG42100.11912910680617694No Hit
TCCTTAAACAGGGAGG39780.11256427241685793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)