FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004948211

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948211
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences875430
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG86321298.60434300857864No Hit
ATTGGCCG21190.2420524770684121No Hit
ATTGGACA18980.21680774019624643No Hit
ATTGAACG10410.11891299132997497No Hit
ATAGGACG9760.11148806872051449No Hit
ATTGGACC9080.10372045737523275No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)