FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948214

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948214
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences875430
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA36060.41191186045714684No Hit
GTCGACCGATGCTCAA31690.3619935346058509No Hit
CATTCAACTAGGCATG30360.3468010006511086No Hit
ACTGGGCACTTCTCGC25560.291970802919708No Hit
TGTAAGCTGTTGTGAC25090.28660201272517505No Hit
GGGGGGGGGGGGGGGG22330.25507464902961974No Hit
GCTTTAGGAACTAGTC21070.24068172212512706No Hit
TAGTTGCGACATAGCT14070.16072101710016792No Hit
CATCAGTGATTCGCAA13440.15352455364792159No Hit
CAGGAGCCTCGTGCAC11790.13467667317775264No Hit
CAGGAGCCTTCCAATG10320.11788492512251121No Hit
TCCTTAAACAGGGAGG9810.11205921661354991No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)