FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2667396
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT78900.29579410031356423No Hit
NNNNNNNNNNNNNNNN77360.2900206793441994No Hit
GGGGGGGGGGGGGGGG76650.28735890733884284No Hit
TCGCGGTGAGTCTTGA71620.26850156482202114No Hit
GTTAAGAGAGTACGTT50730.19018548427005214No Hit
CGCTTACTGATCACAC46870.17571444210008563No Hit
TACCAGTGATACGATC44350.16626702596839762No Hit
ATCTTACTGGTTTGGT42120.15790681248678487No Hit
TTGTGGTGAAAGACAT42040.15760689451435034No Hit
ATAGATGGAGAGTAAT41560.1558073866797431No Hit
ATTCCTAACTGCGTGC39930.14969655799138937No Hit
ATATGCCGAGAACAGC39610.14849688610165118No Hit
TGGAACACTTGAGGCA36560.13706251340258438No Hit
CTTGACGCTCAGGGTA34600.12971452307793818No Hit
CTTTCTGCTCTTGTGA34350.12877727941408026No Hit
GCGGTTCGAAGCAAGC33830.12682781259325573No Hit
AGGTAGCGATTGACCA33700.12634044588804963No Hit
AGCTCTGCTGGCCTGT33380.12514077399831147No Hit
GCTATACGACAGGTGA31610.11850508885819727No Hit
TGTGACTGACCGTTAA30440.11411878851134215No Hit
ACGCTCTTGCCTCAAA30030.11258170890261514No Hit
AGTTCACGACCAGAGA29800.11171944473186585No Hit
ACTGGAACTCTGGAAG29770.11160697549220289No Hit
ACCCTTTCTAGGTGAC29250.10965750867137837No Hit
TTCCAAACTCCGCTAG28980.10864528551441181No Hit
TGTACCCTGCTGAGAG28320.10617096224182687No Hit
TCCCAGACTCCTAACA28310.10613347249527254No Hit
TCAGTCCACCCAGCAC27990.10493380060553438No Hit
ACACTCCACCGTACAT27960.10482133136587143No Hit
ACATGTGTGTCAATGC27950.10478384161931713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)