FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3654740
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTACC355000197.13416002232717No Hit
AGGCTACA203970.5580971560220426No Hit
AGGCTCCC126240.3454144480865944No Hit
AGGCAACC102970.28174370817075906No Hit
CGGCTACC78940.2159934769641616No Hit
ACGCTACC63290.1731723734109677No Hit
AGGATACC48120.1316646327782551No Hit
AGTCTACC46960.12849067238709183No Hit
AGCCTACC46820.12810760820195144No Hit
AGGCTAAC42590.11653359746520955No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)