FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4641540
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA192350.4144098725853919No Hit
CATTCAACTAGGCATG171330.36912317894491914No Hit
GTCGACCGATGCTCAA156480.3371294871960599No Hit
ACTGGGCACTTCTCGC139020.2995126617458861No Hit
GGGGGGGGGGGGGGGG138110.2975521055511748No Hit
TGTAAGCTGTTGTGAC132330.2850993420287232No Hit
GCTTTAGGAACTAGTC95580.20592303416538477No Hit
TAGTTGCGACATAGCT78190.16845702073018867No Hit
CATCAGTGATTCGCAA75520.16270461958746452No Hit
CAGGAGCCTCGTGCAC64520.1390055886623836No Hit
NNNNNNNNNNNNNNNN57030.12286870305976035No Hit
CAGGAGCCTTCCAATG56430.12157602864566502No Hit
TCCTTAAACAGGGAGG52380.11285047635052159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)