FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3979896
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC387503997.3653331644847No Hit
TAAGCCCC202520.5088575178848894No Hit
AAAGCCAC149080.3745826524110178No Hit
TAACCCAC117710.29576149728535617No Hit
TAAACCAC107630.27043420230076365No Hit
TAAGCCAA93010.23369957405922165No Hit
TAAGCAAC59580.14970240428393106No Hit
TAATCCAC52490.13188786842671266No Hit
TAAGACAC44040.11065615784935083No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)