FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3530795
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTGACT343539197.29794564680192No Hit
CACTGCCT428991.2149954896843345No Hit
CACTGACA122370.3465791698470175No Hit
CACAGACT78550.22247114318446698No Hit
AACTGACT36630.10374434086374315No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)