FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3469227
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA332891895.95561201385784No Hit
CCCCCCCA542361.5633453792444254No Hit
CCCACCAA279460.8055396778590734No Hit
CCCACACA103170.29738613241508843No Hit
CCCACCCC81600.23521089856616473No Hit
CCCAACCA68350.19701795241418335No Hit
CCAACCCA59550.1716520711962636No Hit
ACCACCCA55220.15917090464244626No Hit
CACACCCA47470.1368316342516647No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)