FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3631798
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT582721.6044945230984764No Hit
AAATAGGTGTTGCGTA310650.8553614490673764No Hit
GGCTTGCGACGACATT294740.8115539465576005No Hit
TATCACTACTGGTCCG268160.7383670567581126No Hit
ATGGGTTACCATGCGC260750.7179639396243954No Hit
GTGTTGTGAGGGTAGT177960.49000522606158164No Hit
CTAATCTTGCCACTTC169510.466738513540676No Hit
CTGCTTTCTCCACTTC157290.4330912677412125No Hit
AGAGAATTGCCTCCTA145240.39991210964927015No Hit
CTGGCCAGAGGAATGC110730.304890305022471No Hit
AGCCGAGCTGCCCTTT110190.3034034381868154No Hit
AATGGTGCTTCGTACA101010.27812670198067185No Hit
GGGGGGGGGGGGGGGG95700.26350584476339267No Hit
TCCCTGTGACCCGCAA86080.23701758743190013No Hit
GCTCCTAACCTATCTT80600.2219286425070998No Hit
GAGAGAAGACTCACGG77490.2133653909165653No Hit
TGCCGTTACAATCTGC77320.21289730320904413No Hit
CTTAATCTGGGAATTA72970.20091976481070808No Hit
TTGTCAACTAATACAG71600.197147528579508No Hit
TCTTTCCACCGAGTGA70980.19544038517560725No Hit
GCTGTTCTGATAGGTA67690.18638151130652092No Hit
GTAATCGTGATCCTCC67230.18511492103911065No Hit
TCGTATACTTTCTGGA67100.1847569716157121No Hit
TAGCGCGACAAGACAT66730.18373819248757778No Hit
GGGATGTGAAGGTGCA66100.18200351451264635No Hit
AGTCCTGCTCCTAGTA62920.17324752092489726No Hit
GCAAATCTGGAATTGA55230.1520734358023216No Hit
TGCAATGACACCTTGA54890.15113726038727926No Hit
TGTCAATCTGGTGTCC54380.14973299726471573No Hit
GTTGTTGGATTCCATT53870.14832873414215217No Hit
TTGCGTCACCACTCAA53440.14714474758783389No Hit
CCTTTCTACTCGGGCT50460.13893944542069794No Hit
TACGCCTTGCTGATCA50340.13860903056833007No Hit
TTGTTTGTGGCGCTGT48720.13414843006136357No Hit
CAAGTGGGATAGCGAG48430.13334992750147448No Hit
TACAACCGATCGCTAA47940.13200073352097225No Hit
GGTTGAACTTCTTTGT47390.1304863321142861No Hit
GAGGTGCCTTCGTACA45370.12492434876609326No Hit
TAAGGGCGATTTCTTG45280.12467653762681735No Hit
TTCCACTCTCGAATCT45050.12404324249311223No Hit
CCCACCTCTCATGATC44520.12258391022848737No Hit
AATCCAGACTACCAAC44390.12222596080508884No Hit
CTGCCATTGTCTTTGT44270.12189554595272094No Hit
AGAACGCGAGGAGTCA43500.1197753839833603No Hit
TCTTTCCACTTCGCAA42490.1169943923092639No Hit
CCTTTCTACTCATTTC41980.11559012918670036No Hit
GTGGTAACTTTTCCGC41550.1144061426323821No Hit
GAGAGGTTGATGTGGG41160.11333229436218645No Hit
CGGAATTTGAGAGGCT40700.1120657040947762No Hit
GCTCCTAACGAATAGT39310.1082383987215148No Hit
AGCACATTGCTGGAAG37870.1042734204931001No Hit
CGTTTGCTGGCTAATC37820.10413574763794683No Hit
TATTGCTTGTTCGTTT37400.1029792956546592No Hit
ATGTGTGTGCCTTTGC37030.10196051652652488No Hit
CCAGCTTTGGGAATGC36490.10047364969086936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)