FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4022961
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT393216297.74298085415195No Hit
AAGTTGAA172010.42757063764724534No Hit
AAGTTCAT81320.20213966777207137No Hit
AACTTGAT79740.198212212348069No Hit
AAGTTGCT76690.1906307319409758No Hit
AAGTAGAT68240.16962630261640618No Hit
AATTTGAT67140.1668919982072906No Hit
AAGATGAT66050.16418255111098518No Hit
AAGTTTAT44850.11148504795348502No Hit
ATGTTGAT44220.10991903724644608No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)