FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1053452
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTCAACTAGGCATG40030.37998883670067546No Hit
TGGCCGATGGTTAGAA36970.35094147621343924No Hit
ACTGGGCACTTCTCGC31760.30148502257340626No Hit
GTCGACCGATGCTCAA31490.29892202017747366No Hit
GGGGGGGGGGGGGGGG30860.2929416812536309No Hit
TGTAAGCTGTTGTGAC30210.2867714903004598No Hit
GCTTTAGGAACTAGTC21590.20494526565994464No Hit
TAGTTGCGACATAGCT18750.17798627749532014No Hit
CATCAGTGATTCGCAA17760.16858860204356724No Hit
CAGGAGCCTCGTGCAC14610.13868690742435344No Hit
CAGGAGCCTTCCAATG13700.13004864008991393No Hit
TCCTTAAACAGGGAGG11840.11239240136237817No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)