FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3246227
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT313199496.48105323503255No Hit
GCGCCCCT321130.9892407400961178No Hit
GCGCACCA235820.7264433448431055No Hit
GCGCACAT67580.2081801426702446No Hit
CCGCACCT55170.16995114636160688No Hit
GCCCACCT51530.1587381289108864No Hit
GCGCACCG50250.15479508980733633No Hit
GCGAACCT46250.14247309260874239No Hit
GCGCAACT44160.13603484907247707No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)