FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3246227
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT86440.266278359461615No Hit
GGGGGGGGGGGGGGGG79390.24456083939909315No Hit
TCGCGGTGAGTCTTGA74490.22946639283081557No Hit
GTTAAGAGAGTACGTT65020.20029406446314446No Hit
TACCAGTGATACGATC55880.1721383008643573No Hit
CGCTTACTGATCACAC55800.17189186092038544No Hit
ATCTTACTGGTTTGGT55260.17022839129857523No Hit
TTGTGGTGAAAGACAT54060.16653179213899705No Hit
ATAGATGGAGAGTAAT51050.1572594892470551No Hit
ATTCCTAACTGCGTGC50640.15599648453419923No Hit
ATATGCCGAGAACAGC49190.15152976054970893No Hit
TGGAACACTTGAGGCA46390.1429043625106932No Hit
GCTATACGACAGGTGA44800.13800636862425208No Hit
CTTTCTGCTCTTGTGA43620.13437137945066688No Hit
CTTGACGCTCAGGGTA42980.13239985989889183No Hit
AGCTCTGCTGGCCTGT42510.13095202522805705No Hit
ACTGGAACTCTGGAAG40520.12482183162175657No Hit
AGGTAGCGATTGACCA40080.12346641192991124No Hit
TGTGACTGACCGTTAA39400.12137167240615027No Hit
TGTACCCTGCTGAGAG37530.11561113871580761No Hit
AGTTCACGACCAGAGA37330.11499503885587792No Hit
ACCCTTTCTAGGTGAC36380.11206856452121185No Hit
GCGGTTCGAAGCAAGC36030.11099038976633488No Hit
TCCCAGACTCCTAACA35890.11055911986438409No Hit
TTCCAAACTCCGCTAG35270.10864921029860204No Hit
ACATGTGTGTCAATGC35140.10824874538964772No Hit
ACACTCCACCGTACAT34180.10529146606198518No Hit
TCAGTCCACCCAGCAC33490.10316592154522775No Hit
CACAGCTCTCTCTGGG33230.10236499172731914No Hit
CAGTGGAGAGATCATC32760.10091715705648435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)