FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3754609
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA189930.5058582664666281No Hit
CGACCAGACGCGCTGT183800.4895316662800308No Hit
TAGCTTTACCCTATCC171220.4560261800895912No Hit
CCAGGACTGTAACTCG134990.3595314452183969No Hit
ATCTGTACTGGGACTA121590.32384197662126735No Hit
GTTCTCGACCGTAGAG117240.3122562162930947No Hit
CTTCCTTTGGCTCAGC115570.30780834968434795No Hit
CGATCAAACCCGGCTA111500.29696833944626455No Hit
AGACCATTGAATCCAC103040.2744360331528529No Hit
GATGAATGACTCCTAC100130.2666855590022823No Hit
GGGGGGGGGGGGGGGG100100.26660565720691554No Hit
TGCTGCTACTTTCTTG94040.25046549454284056No Hit
GGCAACAGAATAGCAA92370.24601762793409382No Hit
ACAGCCGACTTGCGTA88720.23629624283114434No Hit
NNNNNNNNNNNNNNNN82630.2200761783717026No Hit
AACTTACCTCACCTAA81850.2179987316921682No Hit
CGCGTTGGAGCGGTTC76510.2037762121168942No Hit
ATCGAAAGATTTCCGC75520.20113945286979285No Hit
CCCTGAACTAGCTTTG73340.19533325573981206No Hit
GTAACTGTGTGAAAGT73080.19464077351330059No Hit
AGTGGAGTGAGTTGAA68830.18332135250301695No Hit
CAATTCGGATAACGGG67710.18033835214265986No Hit
GGGTAGAACCAGTCTA65370.17410601210405666No Hit
AAGAACCCTTAACCCA61740.164437894864685No Hit
CGCGATCGATATCTGG61510.16382531443354023No Hit
TTCCTAAACTAATGCC59930.15961715321089362No Hit
TCCGGGAACGTTCTCC58110.15476977762531333No Hit
GTGAAGCGATCCCAGG57850.15407729539880186No Hit
TTTAGTCTGAGCAATA57750.15381095608091283No Hit
TGGAACACTCCTAGTA56160.1495761609264773No Hit
TGCAGATACTGCCACG55980.14909675015427706No Hit
CACATCCTGAGCCTAT54990.14645999090717568No Hit
CTTTAACTGTCCGTAA54090.14406293704617446No Hit
TGATAGAGAGACTGTT54080.14403630311438556No Hit
GCAACTTGAAGGTGCA52830.14070706164077273No Hit
AGTCCTGCTCGAACGA52060.13865624889302722No Hit
AGGTGTGGATCATGTG51420.13695167725853744No Hit
TGCAGTATGACACCGC51120.13615265930487036No Hit
GAGTGTTACACCTGCG51070.13601948964592586No Hit
CATAGGTACAAGGTGC50750.13516720382868097No Hit
CTATTGGGACTTGTGA50440.13434155194322497No Hit
ATTTCTGACGGGTAGT50150.1335691679213468No Hit
TACGTTTACTGCACCG49930.13298322142199093No Hit
TCTCAGAGATGCATGT49170.13095904260603436No Hit
CTTAGATCTTGTCACA48590.129414274562278No Hit
TGAACTGTGAACGTAA47750.12717702429201017No Hit
TCAAAGCACTCTGCAA47540.12661771172444322No Hit
ATGTACGTGTACTTTC47200.12571215804362051No Hit
TGAGGGATGTACGTTG47160.1256056223164649No Hit
TTCTTAGACGTCCCGA46720.1244337293177532No Hit
TGGCAATTGAGTGGTG46670.12430055965880868No Hit
AGAGTACCTTAATCGC45570.12137082716202939No Hit
TCTATGGGATGCTCAA45450.12105121998056256No Hit
GGTCTAAACTCCTACC45290.12062507707194012No Hit
CGAGTCTCTGCTACGC45180.1203321038222622No Hit
GGTCGCATGGTACTAC44960.11974615732290633No Hit
GGGTGTGCTCGCAAAG44940.11969288945932852No Hit
GCATGATACTTGCGTA44430.11833455893809448No Hit
TCCATTTGAAATCTGC43710.11641691584929349No Hit
GTAATCTCTACACAAA43080.11473897814659262No Hit
CACCAGGTGCGCCACA42940.11436610310154799No Hit
TACTGTTTGCTTAAGC42540.11330074582999188No Hit
CATTCTATGCCTAGCG41760.11122329915045748No Hit
GGGATGTGACTGGAAG41720.11111676342330187No Hit
TTGCGGTCTTTTGGGT41470.1104509151285793No Hit
CTACAACGAATCTGTG41410.11029111153784588No Hit
GGCTGACTGAAACTGA41220.10978506683385672No Hit
CTTTCGTCTCGAACGA41030.10927902212986758No Hit
ACCAAGTTGAAGCTAA40620.10818703092652258No Hit
TCCGGGTGAACACCTA40610.10816039699473366No Hit
CTAGCTCACGAATAGT40550.10800059340400027No Hit
ATGTCCAGACCGCTAG40380.1075478165635889No Hit
AGACTACTGGCCCTAG40170.10698850399602196No Hit
TCGGACCGATAGGCGA39580.10541710202047669No Hit
AGCCAATTGTTATGGC39420.10499095911185424No Hit
CATAGTCGAAGATTCC39350.10480452158933193No Hit
CGAGTCTCTTGGAACG39330.10475125372575414No Hit
CACATTACTGATGGAC39230.1044849144078651No Hit
TGTAAGCACGCGCTGT39170.1043251108171317No Hit
GGGCCTTGACTATCTT39130.10421857508997608No Hit
AGGCGATGACCTGCGA39080.10408540543103156No Hit
TGCTAGTGAAGGCGTA38560.10270044097800864No Hit
TGCGCAGACATCAGGG37850.10080943182099655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)