FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6318504
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGTCC611110196.71752997228458No Hit
CCCAGTCC513870.8132779531357424No Hit
ACCAGTCA417890.6613749077313238No Hit
ACCAGACC158420.25072390553206897No Hit
ACCACTCC143320.22682584358576016No Hit
ACAAGTCC122290.19354264870292082No Hit
ACCAGTAC78720.12458645274261122No Hit
ACCCGTCC75660.11974353422898838TruSeq Adapter, Index 16 (100% over 8bp)
AACAGTCC63920.10116318672901055No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)