FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4887055
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT477819497.77246214744872No Hit
AAGTTGAA201690.41270253762235126No Hit
AAGTTGCT97620.19975220250232503No Hit
AATTTGAT92820.18993033636822176No Hit
AAGTTCAT89960.18407814112998525No Hit
AACTTGAT88500.1810906568475288No Hit
AAGTAGAT81760.16729911981755882No Hit
AAGATGAT80270.1642502488717643No Hit
AAGTTTAT61740.12633375314990317No Hit
ATGTTGAT51350.10507350541379215No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)