FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4150746
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGTAAA407226298.10915917283303No Hit
TAGGAAAA128380.30929379923512546No Hit
AAGGTAAA123360.29719958773675864No Hit
TAGCTAAA82550.19887991218927875No Hit
TACGTAAA72740.17524560645243048No Hit
TATGTAAA56830.13691514730123214No Hit
TAGGTAAT47130.11354585416693772No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)