FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2471246
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT75690.306282741580563No Hit
TCGCGGTGAGTCTTGA67690.2739104079480554No Hit
GGGGGGGGGGGGGGGG57350.2320691667280392No Hit
GTTAAGAGAGTACGTT47660.19285817761566432No Hit
CGCTTACTGATCACAC45150.18270135793846504No Hit
TACCAGTGATACGATC40500.16388493901456996No Hit
ATCTTACTGGTTTGGT39700.16064770565131922No Hit
TTGTGGTGAAAGACAT38870.15728907603694656No Hit
ATAGATGGAGAGTAAT38190.1545374276781834No Hit
ATATGCCGAGAACAGC37010.1497625084673885No Hit
ATTCCTAACTGCGTGC36670.14838668428800694No Hit
TGGAACACTTGAGGCA35210.1424787334000743No Hit
GCGGTTCGAAGCAAGC32980.1334549454000128No Hit
AGGTAGCGATTGACCA32520.1315935362161436No Hit
CTTTCTGCTCTTGTGA32470.13139120913094043No Hit
CTTGACGCTCAGGGTA32320.13078422787533092No Hit
AGCTCTGCTGGCCTGT31770.12855862993809603No Hit
GCTATACGACAGGTGA30110.12184137070935065No Hit
TGTGACTGACCGTTAA29480.11929204943579069No Hit
AGTTCACGACCAGAGA28420.11500271522948341No Hit
ACCCTTTCTAGGTGAC28300.11451713022499581No Hit
ACTGGAACTCTGGAAG27850.11269618645816726No Hit
ACGCTCTTGCCTCAAA27850.11269618645816726No Hit
TTCCAAACTCCGCTAG27270.11034919226981046No Hit
TCAGTCCACCCAGCAC27230.1101873306016479No Hit
TGTACCCTGCTGAGAG27070.10953988392899776No Hit
ACACTCCACCGTACAT26930.10897336809042887No Hit
TCCCAGACTCCTAACA26080.10553380764197492No Hit
GAACTACTGGCCCTGA25080.10148726593791149No Hit
CACAGCTCTCTCTGGG24750.10015190717557056No Hit
ACATGTGTGTCAATGC24730.10007097634148927No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)