FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4310349
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA178210.4134467997834978No Hit
CATTCAACTAGGCATG152040.3527324585549801No Hit
GTCGACCGATGCTCAA150060.34813886300158065No Hit
GGGGGGGGGGGGGGGG125290.29067251862900195No Hit
ACTGGGCACTTCTCGC123990.28765652154848714No Hit
TGTAAGCTGTTGTGAC121930.28287732617474826No Hit
GCTTTAGGAACTAGTC90240.20935659734281378No Hit
TAGTTGCGACATAGCT71600.16611183920373965No Hit
CATCAGTGATTCGCAA68770.1595462455592343No Hit
CAGGAGCCTCGTGCAC58200.13502386929689453No Hit
CAGGAGCCTTCCAATG52230.12117348270406873No Hit
TCCTTAAACAGGGAGG47860.11103509251803045No Hit
NNNNNNNNNNNNNNNN47450.11008389343879114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)