FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2423575
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTAGATC238930898.58609698482613Illumina Single End PCR Primer 1 (100% over 8bp)
TGTAGATA68580.2829704052897063No Hit
TGTAGCTC49250.20321219685794745No Hit
TATAGATC33760.13929835057714327No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)