FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7088407
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAGCA682023496.21673811901601No Hit
GTGGCGCA839651.1845397703602516No Hit
GGGGAGCA831831.1735076724572955No Hit
GAGGAGCA105070.14822794458613903No Hit
GTGGTGCA88620.12502103787211993No Hit
GTGGAGAA86910.12260864817722798No Hit
GTGGAGCC84260.11887014952724922No Hit
GTGTAGCA76760.10828949297070556No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)