FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004948312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15871431
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCCTGA1557302298.11983557122228No Hit
TATCCTCA691580.4357389072226695No Hit
TATCCTAA421980.2658739467159577No Hit
AATCCTGA316340.19931410091503404No Hit
TATCCTGC249620.15727630356708228No Hit
TAACCTGA208630.13145002489063526No Hit
TATCCAGA159170.10028711336740839No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)