FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6973972
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT683373897.9891803408445No Hit
AGCTGCGA212300.3044176259956306No Hit
AGCTGCGG167540.24023612368962766No Hit
CGCTGCGT163240.23407034040285793No Hit
AGCAGCGT113050.1621027443184458No Hit
AGCGGCGT76550.10976528153540048No Hit
AGATGCGT71020.10183579744799665No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)