FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4186928
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG408938897.67036834643442No Hit
CTATTTGA303790.7255677671075309No Hit
CTAGTTGG107530.25682314097591363No Hit
CTTTTTGG66500.1588276655342533No Hit
CAATTTGG58600.13995941654597358No Hit
CTAATTGG51950.12407664999254825No Hit
CTATATGG45130.1077878578279827No Hit
CTATTAGG44640.1066175487135198No Hit
CGATTTGG42880.10241398944524482No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)