FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1614627
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTGACT155966696.59605593118411No Hit
CACTGCCT264681.6392640529360651No Hit
CACTGACA64030.3965621781377371No Hit
CACAGACT43690.27058881091422354No Hit
CACTCACT22010.1363163133033202No Hit
AACTGACT22010.1363163133033202No Hit
CACTAACT19670.12182380202981864No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)