FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2478262
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG239097296.47777353645418No Hit
CATCAGTA99540.4016524483690586No Hit
CAGCAGTG68370.2758788215289586No Hit
CCTCAGTG64620.26074724948371075No Hit
CATAAGTG62860.2536454983371411No Hit
CAACAGTG61920.2498525176111323No Hit
CATCACTG60280.2432349767700106No Hit
CTTCAGTG52300.21103499145772317No Hit
CATCAGGG51320.2070806072965651No Hit
CATCAGTC43860.1769788666412187No Hit
CATCAGAG42960.17334728935035926No Hit
AATCAGTG40770.1645104512759345No Hit
CATCAGTT32360.13057537903579203No Hit
CATGAGTG30340.12242450556075185No Hit
CATCATTG28050.11318415889845385No Hit
CGTCAGTG27460.1108034582300015No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)