FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1661474
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT271131.6318642362143494No Hit
AAATAGGTGTTGCGTA141890.8540007246577436No Hit
GGCTTGCGACGACATT135390.8148788365030089No Hit
TATCACTACTGGTCCG121400.7306764956899717No Hit
ATGGGTTACCATGCGC119610.7199029295673601No Hit
GTGTTGTGAGGGTAGT81630.49131072770323225No Hit
CTAATCTTGCCACTTC75840.45646215348539915No Hit
CTGCTTTCTCCACTTC70470.4241414551175643No Hit
AGAGAATTGCCTCCTA65680.3953116329235366No Hit
AGCCGAGCTGCCCTTT50700.3051507276069322No Hit
CTGGCCAGAGGAATGC50310.30280341431764807No Hit
AATGGTGCTTCGTACA45120.2715660913140982No Hit
GGGGGGGGGGGGGGGG42240.2542320854855387No Hit
TCCCTGTGACCCGCAA39690.23888426782483507No Hit
GCTCCTAACCTATCTT38610.23238401563912525No Hit
GAGAGAAGACTCACGG35960.21643432277604102No Hit
TGCCGTTACAATCTGC35300.21246194644032948No Hit
TTGTCAACTAATACAG32970.198438254224863No Hit
CTTAATCTGGGAATTA32580.1960909409355789No Hit
TCTTTCCACCGAGTGA31810.19145650187724875No Hit
GCTGTTCTGATAGGTA31750.19109537675582042No Hit
TCGTATACTTTCTGGA30900.18597943753558588No Hit
GTAATCGTGATCCTCC30880.18585906249510975No Hit
TAGCGCGACAAGACAT29310.17640962181773534No Hit
GGGATGTGAAGGTGCA29290.1762892467772592No Hit
AGTCCTGCTCCTAGTA28390.1708723699558344No Hit
GTTGTTGGATTCCATT25580.15395967676894132No Hit
GCAAATCTGGAATTGA25440.15311705148560856No Hit
TGCAATGACACCTTGA25390.1528161138844183No Hit
TTGCGTCACCACTCAA25000.1504688005951342No Hit
TGTCAATCTGGTGTCC24590.14800111226537402No Hit
CAAGTGGGATAGCGAG22910.13788960886538099No Hit
CCTTTCTACTCGGGCT22400.13482004533324024No Hit
TTGTTTGTGGCGCTGT22000.1324125445237181No Hit
TACGCCTTGCTGATCA21750.13090785651776674No Hit
TACAACCGATCGCTAA21580.12988466867371984No Hit
GGTTGAACTTCTTTGT21260.12795866802610212No Hit
CCCACCTCTCATGATC21230.12777810546538798No Hit
TAAGGGCGATTTCTTG20940.1260326673784844No Hit
GTGGTAACTTTTCCGC19820.1192916651118224No Hit
CTGCCATTGTCTTTGT19800.11917129007134629No Hit
GAGGTGCCTTCGTACA19740.11881016494991797No Hit
TTCCACTCTCGAATCT19660.11832866478801354No Hit
AATCCAGACTACCAAC19550.11766660206539495No Hit
AGAACGCGAGGAGTCA19530.11754622702491885No Hit
TCTTTCCACTTCGCAA19460.11712491438325245No Hit
CCTTTCTACTCATTTC19180.11543966381658696No Hit
GCTCCTAACGAATAGT18920.11387478829039757No Hit
GAGAGGTTGATGTGGG18150.10924034923206744No Hit
CGGAATTTGAGAGGCT18140.10918016171182938No Hit
CGTTTGCTGGCTAATC17890.10767547370587804No Hit
GCGACGTTGAGTGGTG17030.10249934696540543No Hit
TATTGCTTGTTCGTTT16640.10015203367612133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)