FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4186928
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG130050.3106095925222502No Hit
GGACACCTGGCTCCTT124510.2973779343709756No Hit
TCGCGGTGAGTCTTGA114150.2726342559509024No Hit
GTTAAGAGAGTACGTT79850.1907126179384981No Hit
CGCTTACTGATCACAC75660.1807052808168662No Hit
TTGTGGTGAAAGACAT67470.16114439990370028No Hit
TACCAGTGATACGATC66720.15935311044278766No Hit
ATCTTACTGGTTTGGT65110.1555078090666952No Hit
ATAGATGGAGAGTAAT63130.15077880488988588No Hit
ATTCCTAACTGCGTGC62020.14812769648773516No Hit
ATATGCCGAGAACAGC61490.1468618519353569No Hit
GCGGTTCGAAGCAAGC57660.1377143337549631No Hit
CTTGACGCTCAGGGTA57210.1366395600784155No Hit
TGGAACACTTGAGGCA56410.13472885132010867No Hit
GCTATACGACAGGTGA55190.1318150204636908No Hit
AGGTAGCGATTGACCA53630.12808913838499253No Hit
CTTTCTGCTCTTGTGA53170.1269904808489661No Hit
AGCTCTGCTGGCCTGT52850.1262261973456434No Hit
ACTGGAACTCTGGAAG49290.11772354337117812No Hit
AGTTCACGACCAGAGA49160.11741305319795325No Hit
TGTGACTGACCGTTAA48120.1149291318121544No Hit
ACCCTTTCTAGGTGAC47450.11332891322707245No Hit
ACGCTCTTGCCTCAAA47250.11285123603749575No Hit
TGTACCCTGCTGAGAG45780.10934030869410699No Hit
TCAGTCCACCCAGCAC43910.10487402697156482No Hit
TTCCAAACTCCGCTAG43730.1044441175009458No Hit
ACACTCCACCGTACAT43560.1040380918898056No Hit
CACAGCTCTCTCTGGG43330.10348876312179241No Hit
ACATGTGTGTCAATGC42550.10162582208244327No Hit
TCCCAGACTCCTAACA42510.10153028664452793No Hit
GGGAGCTCTTGATGAA42240.10088542243859937No Hit
CAGTGGAGAGATCATC42210.10081377086016287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)