FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2478262
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC154440.623178663111487No Hit
CTCCTAGTGAACGTAA128190.5172576587947522No Hit
TAGCTTTACCCTATCC115720.4669401378869546No Hit
CCAGGACTGTAACTCG87680.35379632984728815No Hit
ATCTGTACTGGGACTA83230.3358401976869274No Hit
CTTCCTTTGGCTCAGC78840.31812617067929055No Hit
GTTCTCGACCGTAGAG77970.3146156459647931No Hit
CGATCAAACCCGGCTA73310.29581214576989845No Hit
CGACCAGACGCGCTGT65650.26490338793880547No Hit
GGGGGGGGGGGGGGGG64780.261392863224308No Hit
TGCTGCTACTTTCTTG63280.25534023440620884No Hit
ACAGCCGACTTGCGTA60270.24319462591122326No Hit
AACTTACCTCACCTAA53670.21656305911158708No Hit
GGCAACAGAATAGCAA51910.20946130796501738No Hit
CGCGTTGGAGCGGTTC50930.20550692380385932No Hit
ATCGAAAGATTTCCGC50930.20550692380385932No Hit
CCCTGAACTAGCTTTG46990.18960868544165224No Hit
AGTGGAGTGAGTTGAA46920.18932622943014096No Hit
GTAACTGTGTGAAAGT46530.18775254593743518No Hit
CAATTCGGATAACGGG44290.17871395356907382No Hit
GGGTAGAACCAGTCTA41750.1684648354370926No Hit
TTCCTAAACTAATGCC40900.16503501244016977No Hit
AAGAACCCTTAACCCA40850.16483325814623312No Hit
CGCGATCGATATCTGG39540.15954729564509323No Hit
GTGAAGCGATCCCAGG39260.15841747159904804No Hit
TTTAGTCTGAGCAATA39050.15757010356451417No Hit
TCCGGGAACGTTCTCC37810.15256659707488554No Hit
TGCAGATACTGCCACG37360.1507508084294558No Hit
TGGAACACTCCTAGTA37220.15018589640643323No Hit
CTTTAACTGTCCGTAA36460.14711923113859632No Hit
TGATAGAGAGACTGTT35730.1441736184471214No Hit
AGTCCTGCTCGAACGA34990.14118765489685917No Hit
GCAACTTGAAGGTGCA34720.1400981817096013No Hit
CACATCCTGAGCCTAT34520.13929116453385476No Hit
AGGTGTGGATCATGTG34140.13775783189993634No Hit
TCTCAGAGATGCATGT33890.13674906043025314No Hit
TGCAGTATGACACCGC33870.13666835871267846No Hit
ATGTACGTGTACTTTC33480.1350946752199727No Hit
ATTTCTGACGGGTAGT33160.13380344773877823No Hit
CATAGGTACAAGGTGC32890.13271397455152037No Hit
CTATTGGGACTTGTGA32610.1315841505054752No Hit
TACGTTTACTGCACCG32570.1314227470703259No Hit
TCAAAGCACTCTGCAA32470.13101923848245262No Hit
TGAGGGATGTACGTTG32400.1307367824709413No Hit
CTTAGATCTTGTCACA31780.128235029226127No Hit
TGGCAATTGAGTGGTG31720.12799292407340304No Hit
TCTATGGGATGCTCAA31090.1254508199698014No Hit
AGAGTACCTTAATCGC31020.12516836395829012No Hit
TGAACTGTGAACGTAA30950.12488590794677884No Hit
TCCATTTGAAATCTGC30260.12210169869045324No Hit
GGTCGCATGGTACTAC30130.12157713752621796No Hit
CGAGTCTCTGCTACGC29990.12101222550319538No Hit
GGGTGTGCTCGCAAAG29940.12081047120925874No Hit
GGTCTAAACTCCTACC29580.11935784029291495No Hit
CTCAATTTGGAATCTC29460.11887362998746702No Hit
TTCTTAGACGTCCCGA29120.11750170078869789No Hit
TACTGTTTGCTTAAGC29010.11705784134203728No Hit
GAGTGTTACACCTGCG28810.11625082416629073No Hit
CTACAACGAATCTGTG28230.11391047435662574No Hit
GCATGATACTTGCGTA28220.1138701234978384No Hit
CATTCTATGCCTAGCG28010.11302275546330454No Hit
CGAGTCTCTTGGAACG27920.11265959773421858No Hit
GGGATGTGACTGGAAG27900.11257889601664392No Hit
TCCGGGTGAACACCTA27680.11169117712332272No Hit
TTGCGGTCTTTTGGGT27510.11100521252393813No Hit
CTAGCTCACGAATAGT27300.11015784448940426No Hit
GTAATCTCTACACAAA26870.10842275756154918No Hit
AGACTACTGGCCCTAG26840.1083017049851872No Hit
CACATTACTGATGGAC26710.10777714382095194No Hit
CACCAGGTGCGCCACA26590.10729293351550401No Hit
CTTTCGTCTCGAACGA26550.1071315300803547No Hit
TCGGACCGATAGGCGA26480.1068490740688434No Hit
CATAGTCGAAGATTCC26370.1064052146221828No Hit
GGCTGACTGAAACTGA26290.10608240775188417No Hit
AGCCAATTGTTATGGC25950.10471047855311504No Hit
TGCTAGTGAAGGCGTA25700.10370170708343185No Hit
TGTAAGCACGCGCTGT25590.10325784763677126No Hit
ACCAAGTTGAAGCTAA25380.10241047960223737No Hit
TAGTACCGAACGAGCA25380.10241047960223737No Hit
ATGTCCAGACCGCTAG25150.10148240985012884No Hit
AGGCGATGACCTGCGA25120.10136135727376686No Hit
ACGAGGATGAACTAGA24910.10051398923923296No Hit
ATAGCCAACCGTTCTC24860.10031223494529634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)