FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2289487
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG68150.29766493542003075No Hit
GGACACCTGGCTCCTT65170.28464891916835516No Hit
TCGCGGTGAGTCTTGA63820.2787524017389048No Hit
GTTAAGAGAGTACGTT45220.19751149493314443No Hit
CGCTTACTGATCACAC42240.18449547868146882No Hit
TACCAGTGATACGATC38620.1686840763891649No Hit
ATCTTACTGGTTTGGT37500.16379215081806536No Hit
TTGTGGTGAAAGACAT36720.1603852740810496No Hit
ATTCCTAACTGCGTGC36370.15885654734008098No Hit
ATATGCCGAGAACAGC35940.15697839734403385No Hit
ATAGATGGAGAGTAAT35170.15361519851390287No Hit
TGGAACACTTGAGGCA32840.14343824620974044No Hit
CTTGACGCTCAGGGTA31150.1360566799462063No Hit
GCGGTTCGAAGCAAGC31100.1358382904117822No Hit
AGCTCTGCTGGCCTGT30560.13347968344000208No Hit
CTTTCTGCTCTTGTGA30230.13203831251280307No Hit
AGGTAGCGATTGACCA29110.12714638694170355No Hit
AGTTCACGACCAGAGA28840.12596708345581348No Hit
GCTATACGACAGGTGA28270.12347744276337888No Hit
TGTGACTGACCGTTAA28260.12343376485649406No Hit
ACCCTTTCTAGGTGAC27130.11849816137850969No Hit
ACTGGAACTCTGGAAG26760.11688207882377144No Hit
TTCCAAACTCCGCTAG25610.11185911953201742No Hit
ACGCTCTTGCCTCAAA24880.10867063232942577No Hit
TGTACCCTGCTGAGAG24790.1082775311674624No Hit
ACACTCCACCGTACAT24710.10792810791238386No Hit
TCAGTCCACCCAGCAC24540.10718558349534198No Hit
CACAGCTCTCTCTGGG24260.10596260210256707No Hit
ACATGTGTGTCAATGC24130.10539478931306445No Hit
CAGTGGAGAGATCATC23900.10439019745471366No Hit
TCCCAGACTCCTAACA23610.10312353815505396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)