FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2121703
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGG205786496.9911434352499No Hit
GGACAGGA249061.1738683500942404No Hit
GGCCAGGG145610.6862883259344027ABI Solid3 GAPDH Forward Primer (100% over 8bp)
GGACAGGC23670.11156132597257956No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)