FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13715337
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAACAT1347492698.24713749286657No Hit
GTAAACAA769440.561006995307516No Hit
GAAAACAT337360.24597281131334944No Hit
CTAAACAT168000.12249061032915197No Hit
GTAAAAAT151000.11009572714108301No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)