FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3733984
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCCT362658097.12360845681182No Hit
TCACTCCA224920.6023593030928895No Hit
GCACTCCT171000.45795589911472573No Hit
ACACTCCT163720.43845929709393505No Hit
TCACACCT65360.17504092143940628No Hit
TCACTACT54520.14601026678207513No Hit
TCACTCAT54490.14592992364187957RNA PCR Primer, Index 45 (100% over 8bp)
TCCCTCCT53420.14306435164157105No Hit
TCAATCCT39240.10508882737580022No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)