FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences997443
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA51270.5140143346537096No Hit
CGACCAGACGCGCTGT49190.49316101270949814No Hit
TAGCTTTACCCTATCC45800.4591741081946537No Hit
GATGAATGACTCCTAC42130.42238002572578087No Hit
CCAGGACTGTAACTCG37400.3749587695738002No Hit
ATCTGTACTGGGACTA33300.3338536638183836No Hit
CTTCCTTTGGCTCAGC31130.3120980346746631No Hit
CGATCAAACCCGGCTA30000.3007690665030483No Hit
GTTCTCGACCGTAGAG29060.29134496908595275No Hit
AGACCATTGAATCCAC26610.2667821619882038No Hit
TGCTGCTACTTTCTTG25670.2573580645711083No Hit
GGGGGGGGGGGGGGGG25250.25314729764006566No Hit
ACAGCCGACTTGCGTA23120.23179269391834922No Hit
AACTTACCTCACCTAA22110.22166680201274658No Hit
ATCGAAAGATTTCCGC20750.2080319376646084No Hit
CGCGTTGGAGCGGTTC20660.20712963046509927No Hit
AGTGGAGTGAGTTGAA19680.19730450762599966No Hit
CCCTGAACTAGCTTTG19150.19199092078444582No Hit
CAATTCGGATAACGGG18230.18276733607835235No Hit
GTAACTGTGTGAAAGT18050.18096272167933405No Hit
TTCCTAAACTAATGCC16190.16231503955614507No Hit
AAGAACCCTTAACCCA16060.16101170693463185No Hit
CGCGATCGATATCTGG16020.16061068151262778No Hit
TTTAGTCTGAGCAATA15750.15790375991410036No Hit
TCCGGGAACGTTCTCC15640.15680094000358918No Hit
TGCAGATACTGCCACG15290.1532919675610536No Hit
TGGAACACTCCTAGTA15150.1518883785840394No Hit
GGGTAGAACCAGTCTA15140.15178812222853838No Hit
GTGAAGCGATCCCAGG15110.15148735316203532No Hit
AGTCCTGCTCGAACGA14600.1463742790314835No Hit
CTTTAACTGTCCGTAA14590.14627402267598247No Hit
AGGTGTGGATCATGTG14250.14286530658894794No Hit
CACATCCTGAGCCTAT14140.14176248667843677No Hit
TCTCAGAGATGCATGT14030.14065966676792557No Hit
TGATAGAGAGACTGTT13820.13855428330240427No Hit
CTATTGGGACTTGTGA13790.1382535142359012No Hit
TGCAGTATGACACCGC13770.1380530015248992No Hit
CTTAGATCTTGTCACA13700.13735120703639206No Hit
CATAGGTACAAGGTGC13620.13654915619238392No Hit
ATTTCTGACGGGTAGT13600.1363486434813819No Hit
ATGTACGTGTACTTTC13030.13063403121782396No Hit
TACGTTTACTGCACCG12970.13003249308481787No Hit
AGAGTACCTTAATCGC12950.12983198037381585No Hit
TCAAAGCACTCTGCAA12940.12973172401831484No Hit
TGAACTGTGAACGTAA12650.12682428970878537No Hit
TGGCAATTGAGTGGTG12450.12481916259876505No Hit
CGAGTCTCTGCTACGC12240.1227137791332437No Hit
TGAGGGATGTACGTTG12230.12261352277774268No Hit
TTCTTAGACGTCCCGA12220.12251326642224167No Hit
TCTATGGGATGCTCAA12140.12171121557823354No Hit
TCCATTTGAAATCTGC11820.11850301220220102No Hit
CTCAATTTGGAATCTC11810.11840275584670001No Hit
TACTGTTTGCTTAAGC11760.11790147406919493No Hit
CTACAACGAATCTGTG11540.11569583424817258No Hit
GGTCTAAACTCCTACC11510.11539506518166955No Hit
CACCAGGTGCGCCACA11490.1151945524706675No Hit
CATTCTATGCCTAGCG11430.1145930143376614No Hit
GCAACTTGAAGGTGCA11290.11318942536064718No Hit
TTGCGGTCTTTTGGGT11260.11288865629414413No Hit
GGGTGTGCTCGCAAAG10990.11018173469561669No Hit
TCCGGGTGAACACCTA10910.10937968385160857No Hit
ACCAAGTTGAAGCTAA10880.10907891478510552No Hit
CTTTCGTCTCGAACGA10840.10867788936310145No Hit
ACCTCAGCTAATCCGT10780.10807635123009536No Hit
CGAGTCTCTTGGAACG10780.10807635123009536No Hit
CTAGCTCACGAATAGT10710.10737455674158823No Hit
ATGTCCAGACCGCTAG10590.10617148047557606No Hit
TCGGACCGATAGGCGA10510.10536942963156792No Hit
AGCCAATTGTTATGGC10450.10476789149856183No Hit
CACATTACTGATGGAC10410.10436686607655776No Hit
AGGCGATGACCTGCGA10380.1040660970100547No Hit
TGCTAGTGAAGGCGTA10340.10366507158805065No Hit
CATAGTCGAAGATTCC10290.10316378981054557No Hit
AAAGCCTTGAACCAAA10260.10286302074404251No Hit
AGCTTGTGATTGCGTA10230.10256225167753948No Hit
TGCGCAGACATCAGGG10210.10236173896653743No Hit
ATAGCCAACCGTTCTC10130.10155968812252932No Hit
AGACTACTGGCCCTAG10090.10115866270052525No Hit
CTAACAGTGCATGATC10000.10025635550101611No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)