FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004948371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7208500
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG188910.26206561697995423No Hit
CCTAGCACTACAGGCA155860.2162169660817091No Hit
CGTTCTCGAATAACCC87960.1220226121939377No Hit
CATTCCTCTACGCGAA81780.11344940001387252No Hit
TCGATGATGTCCCGTT79710.1105777901088992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)