FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004948375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16923584
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT1652395697.63863257333671No Hit
AGCTGCGA566350.33465133626541516No Hit
CGCTGCGT513560.30345818001671515No Hit
AGCAGCGT403030.23814695516032539No Hit
AGCTGCGG336520.19884676910044588No Hit
AGCGGCGT256100.15132728386611252No Hit
AGGTGCGT223720.13219422079862045No Hit
AGCTGGGT210790.124553995182108No Hit
ACCTGCGT186530.1102189701661303No Hit
TGCTGCGT174680.1032169072461247No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)