FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1661650
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT348922.099840519965095No Hit
AAATAGGTGTTGCGTA138740.8349532091595703No Hit
TATCACTACTGGTCCG121480.7310805524629134No Hit
ATGGGTTACCATGCGC114870.6913008154545182No Hit
GGCTTGCGACGACATT84270.5071465109981044No Hit
GTGTTGTGAGGGTAGT78350.4715192730117654No Hit
CTAATCTTGCCACTTC76410.4598441308338098No Hit
CTGCTTTCTCCACTTC68090.4097734179881444No Hit
AGAGAATTGCCTCCTA63410.38160864201245753No Hit
GGGGGGGGGGGGGGGG56820.3419492672945566No Hit
CTGGCCAGAGGAATGC49250.2963921403424307No Hit
AGCCGAGCTGCCCTTT49160.29585051003520596No Hit
AATGGTGCTTCGTACA43530.2619685252610357No Hit
GCTCCTAACCTATCTT39930.24030331297204585No Hit
TCCCTGTGACCCGCAA38490.23163722805644993No Hit
GAGAGAAGACTCACGG35090.21117563867240394No Hit
TGCCGTTACAATCTGC32500.19558872205338068No Hit
GCTGTTCTGATAGGTA32280.1942647368579424No Hit
CTTAATCTGGGAATTA32180.19366292540547045No Hit
TCTTTCCACCGAGTGA31770.1911954984503355No Hit
TTGTCAACTAATACAG31380.18884843378569494No Hit
TAGCGCGACAAGACAT30240.18198778322751483No Hit
GTAATCGTGATCCTCC30040.18078416032257094No Hit
GGGATGTGAAGGTGCA27580.1659795985917612No Hit
TCGTATACTTTCTGGA27580.1659795985917612No Hit
AGTCCTGCTCCTAGTA27130.16327144705563745No Hit
GCAAATCTGGAATTGA25500.15346192038034484No Hit
TTGCGTCACCACTCAA23920.14395329943128818No Hit
TGCAATGACACCTTGA23860.143592212559805No Hit
GTTGTTGGATTCCATT23580.14190714049288358No Hit
CCTTTCTACTCGGGCT23110.13907862666626547No Hit
TGTCAATCTGGTGTCC22470.13522703337044503No Hit
TACGCCTTGCTGATCA22470.13522703337044503No Hit
GGTTGAACTTCTTTGT22000.13239851954382692No Hit
TACAACCGATCGCTAA21940.13203743267234377No Hit
TTGTTTGTGGCGCTGT21160.12734330334306262No Hit
CAAGTGGGATAGCGAG21020.1265007673096019No Hit
AATCCAGACTACCAAC19990.12030210934914091No Hit
TTCCACTCTCGAATCT19980.12024192820389373No Hit
CCCACCTCTCATGATC19870.11957993560617458No Hit
CTGCCATTGTCTTTGT19820.1192790298799386No Hit
TAAGGGCGATTTCTTG19680.1184364938464779No Hit
CCTTTCTACTCATTTC19370.11657087834381488No Hit
GCTCCTAACGAATAGT19330.1163301537628261No Hit
AGAACGCGAGGAGTCA19290.11608942918183733No Hit
TCTTTCCACTTCGCAA19000.11434417596966871No Hit
GTGGTAACTTTTCCGC18540.11157584328829778No Hit
GCGACGTTGAGTGGTG18030.10850660488069087No Hit
CGGAATTTGAGAGGCT17790.10706225739475822No Hit
TATTGCTTGTTCGTTT17600.10591881563506153No Hit
GAGAGGTTGATGTGGG17000.10230794692022989No Hit
AGCACATTGCTGGAAG16760.10086359943429722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)