FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3086834
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA302477297.98946104649619No Hit
CGTGCAAA119060.3857026325354716No Hit
AGTGCTAA74270.24060250729388105No Hit
CGAGCTAA52510.17010956857414425No Hit
CGTGGTAA40240.13036010358833677No Hit
CGTCCTAA36770.1191188123494817No Hit
CGTGATAA33330.10797470806658213No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)