FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3299299
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGTAAA324542898.36719860794672No Hit
TAGGAAAA95310.28887954683707057No Hit
AAGGTAAA78050.23656540374182516No Hit
TAGCTAAA40950.12411727460893966No Hit
TAGGTAAT38740.11741888201099689No Hit
TACGTAAA36630.11102358410074381No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)