FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2975923
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG79770.26805129030556235No Hit
GGACACCTGGCTCCTT72040.24207615586828019No Hit
TCGCGGTGAGTCTTGA61380.2062553365796091No Hit
GTTAAGAGAGTACGTT59330.1993667174856339No Hit
TACCAGTGATACGATC52580.17668467900547158No Hit
TTGTGGTGAAAGACAT50880.17097216561046774No Hit
CGCTTACTGATCACAC49630.1667717881141414No Hit
ATCTTACTGGTTTGGT49220.16539406429534634No Hit
ATAGATGGAGAGTAAT48060.16149611397875552No Hit
ATTCCTAACTGCGTGC47330.1590430935209009No Hit
ATATGCCGAGAACAGC46580.1565228670231051No Hit
TGGAACACTTGAGGCA42900.14415695567392034No Hit
GCTATACGACAGGTGA40350.13558818558141456No Hit
CTTTCTGCTCTTGTGA40250.13525215538170846No Hit
AGCTCTGCTGGCCTGT39490.13269832586394206No Hit
CTTGACGCTCAGGGTA38290.12866596346746875No Hit
ACTGGAACTCTGGAAG37970.1275906668284092No Hit
TGTGACTGACCGTTAA36370.12221418363311147No Hit
AGGTAGCGATTGACCA35540.11942513297555077No Hit
TGTACCCTGCTGAGAG35300.11861866049625612No Hit
AGTTCACGACCAGAGA34870.11717373063751986No Hit
ACCCTTTCTAGGTGAC33640.11304055918113472No Hit
TTCCAAACTCCGCTAG32940.11068834778319198No Hit
ACACTCCACCGTACAT32760.11008349342372097No Hit
CACAGCTCTCTCTGGG32220.10826893034530799No Hit
TCCCAGACTCCTAACA32030.10763047296586639No Hit
ACATGTGTGTCAATGC31920.10726083974618968No Hit
CAGTGGAGAGATCATC31680.10645436726689501No Hit
TCAGTCCACCCAGCAC30840.1036317135893637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)