FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2975923
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT287176096.49980863080127No Hit
GCGCCCCT244980.8232067832400233No Hit
GCGCACCA222850.7488433000450616No Hit
GCGCACAT64780.21768036336961677No Hit
CCGCACCT58720.1973169332674266No Hit
GCCCACCT50800.17070334145070284No Hit
GCGCACCG49360.1658645065749349No Hit
GCGAACCT44960.15107917778786614No Hit
GCGCAACT37590.126313752069526No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)