FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4482905
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA230940.5151570242956298No Hit
CGACCAGACGCGCTGT214490.4784620686809111No Hit
TAGCTTTACCCTATCC200020.4461838919182985No Hit
CCAGGACTGTAACTCG160180.35731294774259104No Hit
ATCTGTACTGGGACTA148270.3307453537382568No Hit
GTTCTCGACCGTAGAG139860.3119851970987563No Hit
CTTCCTTTGGCTCAGC138910.3098660355283014No Hit
CGATCAAACCCGGCTA130230.29050359086351374No Hit
AGACCATTGAATCCAC118340.26398061078697854No Hit
GGCAACAGAATAGCAA115760.2582254141009011No Hit
TGCTGCTACTTTCTTG112840.2517117806422398No Hit
GGGGGGGGGGGGGGGG110320.24609042573955953No Hit
ACAGCCGACTTGCGTA104930.23406697219771552No Hit
AACTTACCTCACCTAA93970.20961853976383618No Hit
CGCGTTGGAGCGGTTC91070.20314952023297392No Hit
ATCGAAAGATTTCCGC89740.20018269403433714No Hit
CCCTGAACTAGCTTTG86120.19210757310270907No Hit
GTAACTGTGTGAAAGT85270.19021148117124945No Hit
AGTGGAGTGAGTTGAA84120.18764618032280408No Hit
CAATTCGGATAACGGG80170.17883492958249173No Hit
GGGTAGAACCAGTCTA75960.1694436977807917No Hit
GATGAATGACTCCTAC73340.16359927323911616No Hit
TTCCTAAACTAATGCC72800.1623946971885418No Hit
AAGAACCCTTAACCCA72160.1609670514989722No Hit
TTTAGTCTGAGCAATA70630.15755408602234489No Hit
CGCGATCGATATCTGG69970.15608182640497623No Hit
TCCGGGAACGTTCTCC69660.15539031052409097No Hit
TGGAACACTCCTAGTA68130.15197734504746363No Hit
GTGAAGCGATCCCAGG67430.15041585757449688No Hit
TGCAGATACTGCCACG66920.14927820241562112No Hit
TGATAGAGAGACTGTT64530.14394683804363465No Hit
CACATCCTGAGCCTAT63260.141113853628395No Hit
CTTTAACTGTCCGTAA63140.1408461700616007No Hit
GCAACTTGAAGGTGCA62900.14031080292801207No Hit
AGGTGTGGATCATGTG61990.13828086921315533No Hit
AGTCCTGCTCGAACGA61680.13758935333227004No Hit
CATAGGTACAAGGTGC61020.13611709371490138No Hit
TGCAGTATGACACCGC60350.1346225271336332No Hit
CTTAGATCTTGTCACA59810.13341795108305884No Hit
TCAAAGCACTCTGCAA58980.13156647307939828No Hit
ATTTCTGACGGGTAGT58770.13109802683750826No Hit
CTATTGGGACTTGTGA58430.1303395900649244No Hit
TACGTTTACTGCACCG58420.1303172831010249No Hit
TCTCAGAGATGCATGT58350.13016113435372823No Hit
GAGTGTTACACCTGCG58260.1299603716786325No Hit
TGGCAATTGAGTGGTG56790.1266812479854023No Hit
ATGTACGTGTACTTTC55950.12480746301784224No Hit
TGAGGGATGTACGTTG55810.12449516552324887No Hit
TGAACTGTGAACGTAA55670.12418286802865554No Hit
GGTCGCATGGTACTAC55450.12369211482286598No Hit
AGAGTACCTTAATCGC55260.123268282508775No Hit
CGAGTCTCTGCTACGC54900.12246523180839211No Hit
GGTCTAAACTCCTACC54760.12215293431379876No Hit
TCTATGGGATGCTCAA54720.12206370645820065No Hit
TTCTTAGACGTCCCGA54140.12076990255202821No Hit
TCCATTTGAAATCTGC52840.11786999724508997No Hit
GGGTGTGCTCGCAAAG52660.11746847189489851No Hit
TACTGTTTGCTTAAGC52420.1169331047613099No Hit
GCATGATACTTGCGTA52190.11642004459162082No Hit
GGGATGTGACTGGAAG51980.11595159834973082No Hit
CACCAGGTGCGCCACA50250.11209249359511299No Hit
CTACAACGAATCTGTG50110.11178019610051965No Hit
GGCTGACTGAAACTGA49810.11111098718353388No Hit
TCCGGGTGAACACCTA49690.1108433036167396No Hit
TCGGACCGATAGGCGA49460.11033024344705052No Hit
GTAATCTCTACACAAA49290.10995102506075859No Hit
CATTCTATGCCTAGCG48450.1080772400931985No Hit
CTTTCGTCTCGAACGA48350.10785417045420324No Hit
CACATTACTGATGGAC48300.10774263563470562No Hit
AGACTACTGGCCCTAG48260.10765340777910751No Hit
TTGCGGTCTTTTGGGT48140.10738572421231322No Hit
CTAGCTCACGAATAGT48060.10720726850111703No Hit
ACCAAGTTGAAGCTAA47350.10562347406425075No Hit
AGCCAATTGTTATGGC47190.10526656264185834No Hit
CGAGTCTCTTGGAACG46450.10361584731329351No Hit
TGCTAGTGAAGGCGTA46440.10359354034939398No Hit
AGGCGATGACCTGCGA45790.10214358769592485No Hit
TGCGCAGACATCAGGG45770.1020989737681258No Hit
TGTAAGCACGCGCTGT45420.10131823003164243No Hit
ACGAGGATGAACTAGA45410.1012959230677429No Hit
CATAGTCGAAGATTCC45370.10120669521214481No Hit
ATGTCCAGACCGCTAG45130.10067132807855621No Hit
GGGCCTTGACTATCTT44960.10029210969226428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)