FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004948391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences997443
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT97212797.46191010413628No Hit
ATCGTACA46160.4627833369926903No Hit
ATCGAACT27700.2777101047378146No Hit
AACGTACT21980.22036346939123339No Hit
ATAGTACT21240.2129444990841582No Hit
ATCGTAAT17560.1760501602597843No Hit
ATCCTACT15430.15469555653806782No Hit
ATCGTCCT11500.11529480882616851No Hit
ATCGTAGT10860.10887840207410347No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)