FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences709447
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA27650.3897401779132197No Hit
GTCGACCGATGCTCAA26080.367610265460281No Hit
CATTCAACTAGGCATG24100.3397012038954284No Hit
GGGGGGGGGGGGGGGG19480.27458006024410564No Hit
ACTGGGCACTTCTCGC19470.2744391053877175No Hit
TGTAAGCTGTTGTGAC19070.2688009111321917No Hit
GCTTTAGGAACTAGTC18120.255410199775318No Hit
TAGTTGCGACATAGCT11260.1587151682930508No Hit
CATCAGTGATTCGCAA11090.15631893573445232No Hit
CAGGAGCCTCGTGCAC9140.12883273873876414No Hit
CAGGAGCCTTCCAATG7950.11205911082857493No Hit
TCCTTAAACAGGGAGG7420.10458850344000326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)