FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3706542
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGACCAGGGAT640841.7289430417893552No Hit
GAAGCAGTGGAACCTT237060.6395718704927665No Hit
GTTCTTCCTAACGTAA193630.5224006634755521No Hit
GATACGTACCGCTCGA158350.4272176060597721No Hit
CGCTTAAGATAATAGG154110.41577837240209337No Hit
CATGGAGGATCGACAT151960.40997781759926094No Hit
TGTCCCATGAGACAAT147630.3982957700196032No Hit
AAAGCATGATCTTTGT138300.37312406010777704No Hit
TGAGCGCACAGGACAC132450.35734115517914No Hit
TGTCGAAACTTCGCAA124920.33702572370689443No Hit
TAATTGCCTGTCTGGC123070.3320345486439921No Hit
GGAAGGACTAGGTAAT113750.30688981805683035No Hit
GGGGGGGGGGGGGGGG112680.30400303031774634No Hit
AATGATGGAAAGCTAA97970.2643164437365069No Hit
CATGTCAGAGGTTTGT96110.25929828934894034No Hit
TCGACCTTGTTTCGCC90670.24462153673154113No Hit
GTGAGATCTCGATTAC78980.21308270619893152No Hit
ATGGGTACTTGGCTGC76950.20760590329207115No Hit
AAACGACCTAGGGAGG72920.19673323545234345No Hit
AGCCTACCTTAACTCG70050.18899016927367882No Hit
CAGCTCACTGTTTACG68970.18607640220993044No Hit
TGTTCCTCTTTATGGC68520.1848623326000353No Hit
TTGCGATGACATTCAG67880.18313565582151772No Hit
GCTATGATGACCTGCG67520.18216440013360163No Hit
CTGCCTTGACCATAAC64480.17396268543564325No Hit
CCTGTTGACCCTAGTA62820.16948411754136336No Hit
CAATGTGACCAACGCC61840.16684014372425834No Hit
AGCTTGTGACTCACTC60950.16443898382913238No Hit
TAACCAGACATCACAC60770.16395335598517433No Hit
CATGATGTGTCATGTG58740.15847655307831396No Hit
ATGCCGCGATGCCACG58720.1584225944289853No Hit
ATGGGTACTTTCGGGC58560.1579909252343559No Hit
CACAGCTCTGGACTGA58220.15707362819576845No Hit
CTATTCAACCGAACGA57690.1556437239885586No Hit
CATGCAAACGAAGGCT57670.15558976533922994No Hit
TGGGCCATGCGTTCTC57660.1555627860145656No Hit
TTGTTTGTGATACGCT55400.1494654586404255No Hit
AGAACGCGAGGAATAT55120.14871003754982406No Hit
CATTAGTCTATTCTGG54320.14655169157667713No Hit
ATTAGCGTGGTCGGTC53050.14312531734430636No Hit
CCGCTATTGTTCGCAA51950.14015759163122932No Hit
CACTATACTACGCCAC51730.13956404648861392No Hit
GGGCTGACTAATACAG50960.13748663848946No Hit
GGGTCGTACCGCTCGA49610.13384442965977453No Hit
GGTAGCCTGTGCCACG49560.13370953303645283No Hit
ATAGGAAACAGACTTC49350.13314296721850177No Hit
GGCTTGCGAGTACGTT49320.13306202924450877No Hit
CCCAATGCTGGAATGC48960.13209077355659263No Hit
AACCAACACCGGAATG48910.13195587693327096No Hit
AACGTCCCTTACAGAA48780.1316051457126346No Hit
AGCTCGGACCTTAAGC48490.13082274529736881No Hit
TTGACGTGACCTCAAA48270.1302292001547534No Hit
CCTACGGGATGGAACG47380.12782804025962743No Hit
TTGTAACCTCATCCTC47310.1276391849869771No Hit
CTGATTACTGCTTTGA46560.1256157356371518No Hit
CTGCCATTGCACAGTT46280.1248603145465504No Hit
CGATCAAACCGATCGC46040.12421281075460631No Hit
TGGAGTTACAAGTCTC45950.12396999683262729No Hit
ATAGCCAACATGGCCC45900.12383510020930559No Hit
TGTTTGTTGCGCTCGA45470.12267498924873911No Hit
CGCTGAGTGTTAGCTG45130.12175769221015166No Hit
TCAGGCTCTTAAAGCA44380.11973424286032641No Hit
CGCTTACTGGCCACGT44320.1195723669123404No Hit
CGCTTCCCTGCGCTGT44170.11916767704237535No Hit
ATCTTACTGCGCACTG44090.11895184244506064No Hit
GCAGATACTCGGCTCA43950.11857413189975993No Hit
TTCTAACACTACGTTG42940.11584922010866193No Hit
CATGTTACTAACGTGG42820.11552546821268989No Hit
CGAGTCTCTTACTTTC42820.11552546821268989No Hit
AGCCGGTACGCGCAAA42780.11541755091403255No Hit
CTCGGATCTTTCTGAG42240.11396066738215836No Hit
TGGGTGCACTTCTGAG41900.11304337034357091No Hit
TCCAAAGTGAAGGCCA41830.11285451507092054No Hit
GATACCATGTCTGGAT41730.11258472182427719No Hit
AGTGGTACTCAACGCC41660.11239586655162681No Hit
GTAAGAAACGACAAAT41620.11228794925296948No Hit
GCGTCGATGCTTGAAC41400.11169440411035406No Hit
GCGACGTTGCTTAGTG40560.10942814083854978No Hit
CCTCCCTTGTTTCGCC40250.10859178177395534No Hit
TACAACCGATTCCATT40220.10851084379996233No Hit
AGAACAATGAGTCGGA40040.10802521595600428No Hit
TACGCCTTGGGTTGAG39860.10753958811204622No Hit
CTTAGGCCTTATGACC39570.10675718769678046No Hit
CCTTCAGTGTAGCTTG39520.10662229107345877No Hit
ACCTGCTTGCCAAACT39320.10608270458017204No Hit
GTCCTGACTTTACGAC39250.10589384930752166No Hit
TATCTCCCTGGAATTA38910.10497655226893421No Hit
AACAGCTACTCGAGAG38830.10476071767161954No Hit
ATCGCAATGTAACTCG38700.10440998645098315No Hit
AACCACTGAAAACATG38600.10414019320433979No Hit
TGAGATAGACTCATCC38570.10405925523034679No Hit
TTCACGCTGTGGGCAA38340.10343873076306703No Hit
GAAAGTAACCCTGCGA38040.10262935102313693No Hit
GTGTACTGAATCACAC38030.1026023716984726No Hit
ACCTCCATGGAATTGA37950.1023865371011579No Hit
TCCGGGATGCGAGTTT37900.1022516404778362No Hit
ATTGAGAGATGATCAC37710.10173903330921383No Hit
TTCTATGACCAACGCC37510.10119944681592709No Hit
GGTCAGAGAACCAGTT37500.10117246749126274No Hit
GTTGCTAGACGCTCGA37340.10074079829663336No Hit
CATGTCAGAACAGGTG37220.10041704640066133No Hit
TGGTCCTTGTTTCTGT37190.10033610842666829No Hit
GCGACAAGAAAGGCTG37140.10020121180334662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)