FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1051580
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA43780.4163259095836741No Hit
CATTCAACTAGGCATG38640.36744707963255296No Hit
GTCGACCGATGCTCAA34830.33121588466878416No Hit
GGGGGGGGGGGGGGGG30160.2868065197131935No Hit
ACTGGGCACTTCTCGC29760.28300271971699725No Hit
TGTAAGCTGTTGTGAC29370.279294014720706No Hit
GCTTTAGGAACTAGTC18970.18039521481960477No Hit
TAGTTGCGACATAGCT18480.17573555982426445No Hit
CATCAGTGATTCGCAA16790.1596645048403355No Hit
CAGGAGCCTCGTGCAC14210.13512999486487No Hit
CAGGAGCCTTCCAATG12720.12096083987903916No Hit
TCCTTAAACAGGGAGG11490.10926415489073585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)